So, let's get started!
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Read the documentation. Look for a 'command line' section, and read about the switches.
For example, if the program was called Trill, the programmer might have written the capability to detect and respond to commandline switches so that you could type "C:\Folder\Trill.exe" /q -- and the program would quit instead of starting again.
You would also need a '5 second' time delay function, which is a simple utility that you can find in freeware.