Now that I got the machine back together after making the instructable and I did some engraving and made a PC board.
Cutting plastic is no problem but doing the PC board the bit went a little too deep on the left side of the board and took out all the finer traces. This is when you start tweeking on it. Just take some aluminum foil and put it under the rail of the Y axis. So as the stage travels left to right the height of the bit should stay the same.
Notice I'm just holding the material down with masking tape. What I like about this thing is, it's easy to fix these kinds of problems because it's all made from simple elements.
Here's the new video:http://www.youtube.com/watch?v=LcdozYDpzjU
Also check out the follow up instructions on Stepper Motor Control: Easy Mill Stepper Motor Controller