Step 3Cut and Register Board Layers
Now, turn on the light box. Place the bottom layer facing up, and the top layer facing down. Line them up so that all the pads are aligned evenly. Then tape around the edges and draw a box outlining the board dimensions.
Take the two pieces of paper off the light box, and tape them down to a piece of copper board. Now, drill the registration holes. You should drill at least three holes in an asymmetric pattern around the edge of the box. The holes should go through the paper and the board. Un-tape the paper and board.
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I had ZERO success with ANY toner transfer methods until I tried these two things together:
1) After scrubbing the copper board, drop it into the etching solution for a few seconds. Remove and rinse. Be careful not to touch the copper after it is dipped/rinsed. It roughens up the surface and makes the toner stick much better. It also removes any oils and deep-down dirt that the scrubbing missed.
2) When repairing traces with a "sharpie", roast the board on your iron for about 30 sec. to make sure the "sharpie" ink is completely dry, then etch.
I use a beat-up HP Laserjet 6L, press-n-peel blue with my iron on about 3/4 full heat and moderate pressure, and get great results. Your millage will vary. Experiment a bit. It is probably different with photo paper, but try the above tricks. Good luck!
It might be necessary to use heat-proof Kapton tape, though.
One further question, have you ever tried doing the toner transfer to both sides of the board at the same time? I've only ever done it one side at a time and it tends to smudge the side that's already done. I want to avoid that, too...
The toner transfer itself could have been better. Perhaps it was not heated enough, or some dust or fingerprints got on there. Still, I should be able to repair the board with some etch resist pen.