Step 1: Prep
1. leave 1/2" of space on the edge of the paper you want to bind
2. print on oversized paper and use at least a 1/4" of bleed space (assuming you're cutting this yourself, if not a 1/8" bleed will do)
3. if you're printing double sided, put crop marks on every other page. otherwise put them on every page.
4. and this is the biggie, put marks for the hole's you'll be making on your top page. These should be light and centered about 1/4" (or half the space you left in step 1) from the edge of the page.
You'll also have to decide on your cover. If you want the rivets hidden, leave an extra 1/2" on one end that you'll score and fold under. You can also make wrap covers, like I use on my portfolio, but these take a little more finessing to make lay flat.