Without a picture, its hard to say for sure, but it sounds like you might have a tangerine leopard gecko. They can develop orange colored spots varying from yellow-orange to almost red in color; and they don't normally appear until they are fully developed into an adult (at about a year in age). So if that's what you have, then its perfectly normal, and there's nothing you need to do. If however, you think they are wounds, or sores of some kind, then you should look for a Vet that deals with exotic pets and have it checked out.
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Looks like a perfect answer to me.
Too bad the OP doesn't think so... o_0